WebSince BRAKER is a pipeline that trains AUGUSTUS, i.e. writes species specific parameter files, BRAKER needs writing access to the configuration directory of AUGUSTUS that contains such files.This installation comes with a stub of AUGUSTUS coniguration files, but you must copy them out from the container into a location where you have write … WebMar 31, 2024 · Transcriptome Assessment - BUSCO Metazoa on Hematodinium MEGAN Transcriptome. I previously created a C.bairdi de novo transcriptome assembly with Trinity from the MEGAN6 taxonomic-specific reads for Alveolata on 20240331 and decided to assess its “completeness” using BUSCO and the metazoa_odb9 database. BUSCO was …
RCAC - Knowledge Base: Applications: busco
WebDec 22, 2024 · The arguments can also be specified in a config file, which can be passed to BUSCO using the --config argument. If all parameters are set in the config.ini file, the … WebHi ! I fail to do the functional annotation step when retrieving BUSCO results. It seams like BUSCO annotations are given on the genome but fails to give results for the predicted proteins. skylar mccollough facebook
BUSCO: Assessing Genomic Data Quality and Beyond
WebMar 27, 2024 · Busco uses a config file which needs to be copied and modified to your needs. $ cp $HPC_BUSCO_CONF/config.ini . $ export … WebApr 30, 2024 · You have to run BUSCO with some species in the -sp setting. You should use already available augustus species in the -sp setting that is likely close to your … WebNov 22, 2024 · BUSCO requires a genome assembly (in fasta format) and an ortholog database from OrthoDB (see documentation here for best database choices). It also requires access to a writable AUGUSTUS configuration path. To prepare such a path, recursively copy the default path to your partition: skylar + madison clothes